Comments (21)
karthik
commented on June 11, 2024
Not sure what's going on with your call but here's what I get.
ecoengine_data <- occ(query = "Lynx rufus californicus", from = "ecoengine")
> ecoengine_data$ecoengine
$meta
$meta$source
[1] "ecoengine"
$meta$time
[1] "2014-01-28 23:35:51.092 PST"
$meta$query
[1] "Lynx rufus californicus"
$meta$type
[1] "sci"
$meta$opts
list()
$data
$data$Lynx_rufus_californicus
url
1 http://ecoengine.berkeley.edu/api/observations/LACM%3AMammals
...Now when I plot it:
> mapggplot(ecoengine_data)
Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=36.962747,-118.986366&zoom=5&size=%20640x640&scale=%202&maptype=terrain&sensor=false
Google Maps API Terms of Service : http://developers.google.com/maps/terms
Can you post a screenshot of the map?
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karthik
commented on June 11, 2024
Maybe @sckott can verify so it's not something that just works for me.
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sckott
commented on June 11, 2024
Hmm, I get
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emhart
commented on June 11, 2024
That's what I was getting last night @sckott
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karthik
commented on June 11, 2024
Really bizarre. The call that goes to ecoengine is this:
x <- ee_observations(scientific_name = "Lynx rufus californicus", georeferenced= TRUE)
# The data are in x$data
and when I drag that csv onto MapBox returns the same thing (in case something is off in this package).
So I'm confused. When you look at ecoengine_data$ecoengine, what does it look like?
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karthik
commented on June 11, 2024
PS: You might want to update ecoengine.
install_github("ropensci/ecoengine")from spocc.
sckott
commented on June 11, 2024
Yep, I did update before trying. I'm getting 1-n integers for each record:
<r> ecoengine_data$ecoengine$data[[1]][,c('longitude','latitude')]
longitude latitude
1 1 1
2 2 2
3 3 3
4 4 4
5 5 5
6 6 6
7 7 7
8 8 8
9 9 9
10 10 10
11 11 11
12 12 12
13 13 13
14 10 10
15 14 14
16 15 15
17 16 16
18 17 17
19 18 18
20 19 19
21 20 20
22 21 21
23 22 22
24 23 23
25 24 24from spocc.
karthik
commented on June 11, 2024
and mine just returned:
> ecoengine_data$ecoengine$data[[1]][,c('longitude','latitude')]
longitude latitude
1 -120.4864 35.90087
2 -120.8068 38.72881
3 -122.5522 37.84149
4 -122.8971 38.79410
5 -121.9210 37.59783
6 -120.3390 34.47304
7 -121.8948 37.63383
8 -123.1208 40.75250
9 -122.1949 41.40901
10 -123.2625 38.79764
11 -122.1845 37.90764
12 -123.1780 38.52665
13 -122.2845 38.63194
14 -123.2625 38.79764
15 -122.9462 38.92621
16 -119.5992 37.73661
17 -121.6211 36.80715
18 -121.6428 37.34154
19 -121.7413 36.48891
20 -121.9619 40.31870
21 -123.1181 39.22075
22 -121.1248 35.92967
23 -122.7584 37.94777
24 -116.4701 32.60522
25 -122.4222 37.55764from spocc.
karthik
commented on June 11, 2024
for the record I reinstalled both packages from GitHub.
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karthik
commented on June 11, 2024
I can confirm the same behavior as @sckott on our rstudio.ropensci.org. Totally confused.
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sckott
commented on June 11, 2024
I think this is the offending code
suppressWarnings(as.numeric(obs_data_all$latitude))
In that obs_data_all$latitude is a factor, so then when you do as.numeric it doesn't do the right thing, so doing
suppressWarnings(as.numeric(as.character(obs_data_all$latitude)))
should work
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sckott
commented on June 11, 2024
Maybe you have an options setting that does factor to numeric correctly for you?
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karthik
commented on June 11, 2024
Right, I'm checking the same bits. I wonder if my .rprofile options strings as factors set to FALSE is causing the issue.
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karthik
commented on June 11, 2024
It works fine for me though.
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karthik
commented on June 11, 2024
Yup, that was it! I can replicate the bug in R --vanilla
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karthik
commented on June 11, 2024
Wondering if CRAN will hate me for pushing an emergency bug fix.
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karthik
commented on June 11, 2024
Give it a try now, should work.
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karthik
commented on June 11, 2024
Can you guys do a quick check before I release to CRAN? TIA
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emhart
commented on June 11, 2024
Works for me with the new version of ecoengine that I installed off github.
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sckott
commented on June 11, 2024
Works now, cool cool
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karthik
commented on June 11, 2024
Sweet! Thanks for the bug report, @emhart.
This is why we need code review.
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