rongtingting Goto Github PK

academic-kickstart

Easily create a beautiful website using Academic and Hugo

alleloscope

Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bbmix

Inference of Beta-binomial mixture model

casper

cellcutter

Create thumbnails of cells in a given image.

chisel

CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links

cnv_calling_benchmark

Benchmarking records for scRNA-seq CNV detection.

copykat

corenlp

Stanford CoreNLP: A Java suite of core NLP tools.

dragonstar2019

english-study

first-pr

《GitHub实践入门》实验用仓库

glmpca-py

generalized principal component analysis (GLM-PCA) implemented in python

hilearn

A small library of machine learning methods and data visualization plots

honeybadger

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

image-diff-view-modes

New view modes for image diffs

limix

Linear mixed model for genomic analyses.

limix-plot

Plotting library for genetics.

machine-learning-notes

My continuously updated Machine Learning, Probabilistic Models and Deep Learning notes and demos (2000+ slides) 我不间断更新的机器学习，概率模型和深度学习的讲义(2000+页)和视频链接

ms-snp2phos

ptm-x

PTM-X: a prediction tool for Post-Translational Modification cross-talk

ptm_cooccur

PTM_Cooccur: a analytical strategy to explore functional relationships between PTM sites by testing their tendency to be modified together (co-occurrence) under the same condition.

readingnotes

你今天读论文了吗

resume

Resume page for myself

rongtingting

rongtingting.github.io

Rongting's pages

rt_codelib

CodeLib for daily usage.

scallelecount

calculate alt count/coverage count | original from Nikolas Barkas

scqtlib

single-cell quantitative trait (locus) analysis library