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Name: Joaquín Grau Roldán
Type: User
Bio: Tech & science enthusiast. Bioinformatics Data Engineer at CNB-CSIC.
Location: Spain
Name: Joaquín Grau Roldán
Type: User
Bio: Tech & science enthusiast. Bioinformatics Data Engineer at CNB-CSIC.
Location: Spain
This repository contains jupyter notebooks for weeks 3 and 4 of Accelerated Computational Biology class. This tutorial will cover advanced NumPy lectures including several algorithms used for data analysis in computational biology
Part 2 of the "Accelerated intro to Computational Biology for Biologists" course for the Master's Programme in Computational Biology, Universidad Politecnica de Madrid. This covers the first 2 weeks (~24 hours) of material, taught by Mark Wilkinson.
Exam Questions and instructions for the Accellerated Introduction to Computational Biology M.Sc. course - Wilkinson Section
Analisys performed for the TDThub output when using the Blastp Tool, using anthocianins regulation as example
This is a basic registration method in django
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
ChIP-seq peak-calling, QC and differential analysis pipeline.
TF-DNA-binding assay analysis pipeline
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Pipeline to get the values of Roll, MGW, ProT and HelT from a genome.fa file
GEM-Mapper v3
A package for parsing gff3 (general feature format) files into pandas dataframes
Pipeline codes for analyzing various genomics datasets based on MACS3
Methylated DNA motif discovery tool
This is a pipeline developed to analyce bisulfite and Dapseq experiments
Python program to write new Python programs
Project to build a docker container with python and pandas.
A collective list of free APIs
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
The pytest framework makes it easy to write small tests, yet scales to support complex functional testing
PyWGCNA is a Python package designed to do Weighted correlation network analysis (WGCNA)
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
My personal repository.
:computer: tmux session manager. built on libtmux
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
Toy data generated to facilitate the use and testing of the pipeline wgcnamodules created for the book chapter-
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.