Comments (8)
Hello! try with simple quotation marks 'filename' instead of "filename"
from genovi.
Hi, thanks for the software! Unfortunately using 'filename' does not work and I get the same problem. If it helps, my GBFFs are generated using Bakta.
from genovi.
Hi! We'll look into that. We certainly didn't try with Bakta annotated genomes, so we might need to update genovi considering that.
from genovi.
Hello. Are you using a directory as input or a single file?
"filename" feature only works when input is a directory, not a single file. This is because it only made sense for this case, since for a single file the name could be written directly, easily.
from genovi.
Yes, it's a directory.
from genovi.
In my opinion the best way to handle this is to avoid the strange 'filename' scheme. argparse already has a better way:
parser.add_argument("-n", "--name", action="store_true", help="use the filename " +
"for title text.")
from genovi.
¿Could you please send me the full command line you're trying? This is for me to test it and check in which cases it is not working.
from genovi.
genovi -i ../genovi -t 'filename' -s complete
from genovi.
Related Issues (19)
- --output_file does not work properly HOT 5
- GenoVi does not scale well HOT 1
- Error at the DeepNOG step likely related to PyTorch HOT 2
- Python errors in running GenoVi HOT 6
- Output colours used for COGs in plots and legends do not match HOT 1
- jupyter notebook example? HOT 1
- Windows installation HOT 1
- Docker availability HOT 1
- labeling
- problem with NCBI genebank files HOT 1
- Drawing error HOT 2
- Font size changes?
- Issues with DeepNOG file not found + PNG
- Tutorial fails
- Annotating/labelling genes HOT 1
- Issue with installing GenoVi
- Genovi installation problem HOT 3
- OSError: 'seaborn' is not a valid package style HOT 1
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from genovi.