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batmass

Mass spectrometry data visualization

bokeh

Interactive Data Visualization in the browser, from Python

compms2miner

metabolite identification R-package for metabolomic high-resolution LC-MS datasets.

ctsgetr

R interface to Chemical Translation Service (CTS)

datasciencecoursera

Data Science Coursera

datasharing

The Leek group guide to data sharing

deviumweb

Interactive multivariate data analysis in R implemented in shiny.

dplyr

Dplyr: A grammar of data manipulation

haven

Read SPSS, Stata and SAS files from R

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

ipo

A Tool for automated Optimization of XCMS Parameters - See vignette/IPO.Rmd for help

isotope_correction_toolbox

metabox

a toolbox for metabolomic data analysis, visualization and ‘omic’ integration

metamapr

Network mapping tool for metabolomics + data.

metmsline

R functions for automation of biomarker discovery based on processing downstream of large LC-MS datasets from any peak picking software

msu_ngs2015

DE analysis module for Week3

mz.unity

mz.unity is an R package for detecting and exploring complex relationships in accurate-mass mass spectrometry data

networkly

network visualization using plotly

nxf

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

rsql-parser

Parser for RSQL / FIQL – query language for RESTful APIs

shiny-server

My personal Shiny server

teachingdemos

Bioinformatics related demos and tutorials using the R programming language

testthat

An R package to make testing fun

tutorials

Tutorials as used in the user meetings. (Please assign a git tag for the revision used for the UM)

warpgroup

The warpgroup algorithm takes multiple LC/MS samples and determines: 1. Segregation of those peaks into compound groups; 2. Per-group consensus integration bounds; 3. Integration bounds for samples in which no peak was detected.