robertodf Goto Github PK

abfload

matlab fuction for reading abf files including v2.0 files

allen_visual_dataset_artifacts

tables with dataset artifacts

allenccf

Tools to work with Allen Inst CCF data in matlab

allensdk

code for reading and processing Allen Institute for Brain Science data

brainglobe-heatmap

Rendering anatomical heatmaps with brainrender and matplotlib

brainrender

a python based software for visualization of neuroanatomical and morphological data.

brio

BRain area Input Output

de-filippo-et-al-2022

Code for the reproduction of De Filippo et al., 2022.

deepcca

An implementation of Deep Canonical Correlation Analysis (DCCA or Deep CCA) with pytorch.

ecephys_spike_sorting

Modules for processing extracellular electrophysiology data from Neuropixels probes

end2endpaper

kilosort

Fast spike sorting with drift correction for up to a thousand channels

licking_behavior_np

Analysis of mouse licking behavior during visually guided behavior

matlab-plot-big

Makes large MATLAB line plots much faster.

neuropixels_preprocessing

Preprocessing pipeline for Neuropixels recordings using kilosort, additional cluster metrics, Phy2, and export functions to cellbase

notboxplot

plots things that are not boxplots

openscope_psycode

This repository contains the stimulus behind the PsyCode project

pd-mkmr

A compilation of vanilla made abstractions

raincloudplots

Code and tutorials to visualise your data that is both beautiful *and* statistically valid

robertodf.github.io

robust_statistical_toolbox

Robust_Statistical_Toolbox

shadederrorbar

Produce elegant shaded error bars in MATLAB

sigstar

add significance stars to MATLAB plots

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

spikes

cortex lab code for electrophysiology

stringer-pachitariu-et-al-2018a

Recordings of 10k neurons during spontaneous behaviors

stringer-pachitariu-et-al-2018b

Responses of 10,000 neurons to 2,800 natural images

test_deploy_website

tiffstack

Load TIFF files into matlab fast, with lazy loading

transcriptomics-5-ht