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assembly_snakemake_pipeline

Workflow for the assembly benchmark against TSLR

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

bioconda-recipes

Conda recipes for the bioconda channel.

calour

exploratory and interactive microbiome analyses based on heatmaps

caret_ml

classification/regression on microbiome data with R/caret package

coassembly

Generate coassembly test cases

conda-recipes

conda recipes for bioinformatic tools like blast+, infernal, etc.

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

correlations

Code for correlations verification and testing project.

docs-travis-ci-com

The Travis CI Documentation

dumpling

Application Wrapper

gene-coverage

Report largest fraction of coverage.

gptel

A simple LLM client for Emacs

iggdb

Database of genomes integrated from the gut microbiome and other environments

melpa

Recipes and build machinery for the biggest Emacs package repo

micronota

annotation pipeline for microbial genomes and metagenomes

notes-python

中文 Python 笔记

oecophylla

shotgun pipeline

org-blog

Publish blog with org-mode and Hexo or Jekyll

org-reveal

Exports Org-mode contents to Reveal.js HTML presentation.

pipeline_lite

Generates scripts to run a basic sequencing pipeline.

plugin-demo

a demo to show how to write plugins with setuptools

probabilistic-programming-and-bayesian-methods-for-hackers

aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

programming-collective-intelligence-code

Examples from Programming Collective Intelligence

python-recipes

useful python recipes

scikit-bio

Core objects, functions and statistics for working with biological data in Python.

scikit-bio-feedstock

A conda-smithy repository for scikit-bio.

scikit-bio-rfcs

Request For Comments (RFCs) for scikit-bio.

seqel

Emacs extension for biological sequences

sequence-benchmarks