rmcolq Goto Github PK

aplanat_custom

Simplifies bokeh plotting, particularly tailored for JupyterLab

artic-ebov

Repository of documents and data for Ebola virus

bioconda-recipes

Conda recipes for the bioconda channel.

bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

cluster_vcf_records

Python package to cluster VCF records. Used by gramtools and minos

cmake-googletest-travis-skeleton

Barebones for a C++ repo with cmake and googletest, and a status bar from travis

data

dphil_analysis

Code to generate results for DPhil

elan-nextflow

for data flowing to birmingham

genofunk

Funky tools for viral consensus sequences

geography_cleaning

gramtools

Genome inference from a population reference graph

iqbal-lab.github.io

Build a Jekyll blog in minutes, without touching the command line.

kmerstream

Streaming algorithm for computing kmer statistics for massive genomics datasets

medusa

minos

Variant call adjudication

pandora_simulations

pango-designation

Repository for suggesting new lineages that should be added to the current scheme

pantheon

Pipeline to process metagenomic samples

pathbio3

Pathogen Biology 3

pipeline-resources

Bioinformatics Pipeline and Visualization resources

porechop

adapter trimmer for Oxford Nanopore reads

postbox

Runs post processing pipeline from the command line

rampart

Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

rampart-coi

RAMPART protocol for classifier

readucks

Nanopore read de-multiplexer

rmcolq.github.io

rna_virus_detector

VirBot: a protein-based RNA virus detector for metagenomic data

scylla

single sample processing

singularity_recipes

All my Singularity recipes