rjwangbioinfo Goto Github PK
Name: Ruijia Wang
Type: User
Company: Vor Biopharma
Location: MA
Blog: rjwangbioinfo.net
Ruijia Wang's Projects
anaconda3_boto3_docker
anaconda3_boto3_docker
apalyzer
APAlyzer is a toolkit for bioinformatic analysis of alternative polyadenylation (APA) events using RNA sequencing data. Our main approach is the comparison of sequencing reads in regions demarcated by high-quality polyadenylation sites (PASs) annotated in the PolyA_DB database (https://exon.apps.wistar.org/PolyA_DB/v3/). The current version (v3.0) uses RNA-seq data to examine APA events in 3’ untranslated regions (3’UTRs) and in introns. The coding regions are used for gene expression calculation.
apalyzer-qsr
APAlyzer-QSr is a bioinformatics pipeline performing APA analysis using Quant-Seq REV data. In general it uses PolyA DB3 to clean the PASs indetified from the sequencing data.
densitypeakcluster
Python Code For 'Clustering By Fast Search And Find Of Density Peaks' In Science 2014.
pas_reference_rdata_and_testing_data
Pre-build PAS reference and testing data for APAlyzer
pipeline_docker-r_and_bioconductor
rjwangbioinfo.github.io
My personal website: http://rjwangbioinfo.net
ubuntu1604-pipeline_docker-r_and_bioconductor
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