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ace2_tmprss2_multicorrelates

awesome_spatial_omics

tools and notes for spatial omics

bioinfo-snippets

Repo to host useful codes, texts, and other stuff.

cancer-omics-data-curated

Curated public cancer omics datasets

cellannotationtutorial

Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods

cri-workshop-nov2016-rnaseq

RNAseq pipelines for AMIA2016 workshop

csi-microbes-identification

Code for the identification step for CSI-Microbes

docker-bam_readcount_helper-cwl

dsfdr

descrete False Discovery Rate method

ensembl-vep

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

facets

Visualizations for machine learning datasets

hackathon

Multi-omics studies are available here

mstp_summer2022_class07

nbl-tme-immunogenomics

ndspa

An R package for quality metrics, preprocessing, visualization, and differential testing analysis of spatial omics data. Online link: https://riyuebao.shinyapps.io/ndspa/

q2_dsfdr

splices

star-seqr

RNA Fusion Detection and Quantification

t-cell-inflamed-multicorrelates

This repo hosts the data tables and figures for Bao et al manuscript entitled "Molecular correlates and therapeutic targets in T cell-inflamed versus non-T cell-inflamed tumors across cancer types" Under Review.

virtual-conferences-workshops

This repo collects the list of conferences/meetings/workshops that have gone virtual in 2020.