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acedb

the Sanger Institute version of the venerable genome database system

aiohttp-session

Web sessions for aiohttp.web

api

Repository for version control of the BrAPI specifications

biocontext

JSON-LD Contexts for Bioinformatics Data

biolink-model

Schema and generated objects for biolink data model and upper ontology

biolink-model-pydantic

Pydantic dataclasses for the Biolink model

biolink-model-toolkit

A collection of useful python functions for looking up information and working with the Biolink Model

brapi

Breeding API client-server implementation for Tripal 2 & 3

connexion

Swagger/OpenAPI First framework for Python on top of Flask with automatic endpoint validation & OAuth2 support

darwincore-germplasm

Automatically exported from code.google.com/p/darwincore-germplasm

dipper

Data Ingestion Pipeline for Monarch

docker-jbrowse

Docker image of JBrowse Genome Browser

docker-tripal

Docker container for Tripal

dockerized-gmod-deployment

:whale::bar_chart::books: Galaxy + Apollo + Chado + Tripal + JBrowse + JBrowse REST API + PostGraphQL + JBrowse GraphQL Experiment all as a docker-compose.yml

igv.js-flask

Example project for integrating igv.js and flask

jmri

JMRI model railroad digital command & control software

knowledge-graph-exchange-working-group

logd-germplasm

Automatically exported from code.google.com/p/logd-germplasm

monarch-mapping-commons

Building a fully exectuable workflow for boomer

monarch-plater-docker

monarch-ui

A modern web UI for revealing and understanding Monarch Initiative information.

owltools

OWLTools

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pre-december_2018-divseek-canada-portal

A DivSeek Canada "Crop Module" is a Dockerized crop-specific Tripal instance of the DivSeek Canada Resource platform

prefixes

production

Current BioTapestry production source code release

python-fire

Python Fire is a library for automatically generating command line interfaces (CLIs) from absolutely any Python object.

reasoner-validator

reasonerapi

NCATS Biomedical Translator Reasoners Standard API

rtx

Software repo for Team Expander Agent (Oregon State U., Institute for Systems Biology, and Penn State U.)