rhreynolds Goto Github PK

advent-of-code

Solutions to Advent of Code 🎄

als-neanderthal-analysis

Code for the paper: The contribution of Neanderthal introgression and natural selection to neurodegenerative diseases

colochelpr

Helper/wrapper functions for executing coloc & associated analyses

custom-nf-modules

Custom nextflow modules.

cv

Curriculum vitae

dockerfiles

ewce

Expression Weighted Celltype Enrichment

ggtranscript

Main repository here:

gp2-visualise-longitudinal-variant-effects

IPDGC x GP2 Hackathon 2021 Project - Visualize longitudinal and cross-sectional variant effects

kaggling

Repo for ML, Python and kaggle learning.

lava

Main repository here:

lbd-seq-bulk-analyses

Code for the paper: Cross-platform transcriptional profiling identifies common and distinct molecular pathologies in Lewy body diseases

ldscforryten

S-LDSC scripts for use on MR server.

markergenes

Repository with gene cell-type/tissue specificity matrices.

mkfastq

Nextflow pipeline for 10x cellranger mkfastq

music

Forked MuSiC for scaling with large single cell/nuclei datasets.

neurodegen-psych-local-corr

Code for the paper: Local genetic correlations exist among neurodegenerative and neuropsychiatric diseases

nf-core-modules

Main repository here:

nf-core-rnaseq

Main repository here:

nf-core-scrnaseq

Main pipeline here:

nf-dragen

Main repository here:

nf-test-secret

Workflow to test nextflow secrets

rbd-gwas-analysis

Code for the paper: Genome-wide association study of REM sleep behavior disorder identifies novel loci with distinct polygenic and brain expression effects

rmdplate

.Rmd template

rnaseqprocessing

R package for processing of RNA-sequencing in the Ryten Lab.

rprojecttemplate

Template for data analysis R project

rtargets-reprex

Reprex example for testing.

rutils

Common R utility functions

scflow

Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

test-datasets

Test data to be used for automated testing with the nf-core pipelines