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bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

bioformatsxml

cbias_napari_2023

Learning napari

chromatic-abberation-correction-javafx

ImageJ plugin to do chromatic abberation correction on csv data.

chromatic-aberration-correction

Import csv-files and correct using an affine transforms.

codeshare

Repo to share code online that is not part of a (public) project

cummulativemax

Calculates the running maximum. Based on Matlab's cummax function.

dbscan-for-matlab

using kd-trees

dense-rank-plugin

ImageJ2 plugin to dense rank any IntegerType image

direct

Deep learning framework for image reconstruction

dlup

Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute

docker-nginx-rtmp

Docker Image for RTMP streams using Nginx

fast_tiff_write

A fast multi-image tiff writer for Matlab

fdflim

Frequency domain fluorescence lifetime analysis in ImageJ

fdflim-py

several functions for fdFLIM analysis

flifile

python code for opening a lambert instruments .fli file

generate-tiff-offsets

Generate tiff offsets for optimized remote viewing

ihc-normalization

Stain normalization for IHC image

imagej-macros

A public repository for all our ImageJ Macros

imagej2omerotest

imagej_roi_for_matlab

Simple class to read ImageJ Rois

imagejson

Made to output some settings from a macro into a JSON file.

imagexpress_converter

Script and executable for merging separate .tif files obtained from the ImageXpress microscope (B7) into ImageJ hyperstacks

injector_gui

GUI for the arduino injector

kerk_pptx_generator

Genereer automatisch pptx bestanden voor kerkdiensten gebaseerd op een txt bestand met liederen.

maps

Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

matlab_read_trackmatexml

Read TrackmateXML files in Matlab

miraxreader

learning about the fileformat

monero_wallet_validator

n2v

This is the implementation of Noise2Void training.