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jorainer avatar jorainer commented on August 16, 2024

Yes they are. Problem is:

> methods::show
standardGeneric for "show" defined from package "methods"

function (object) 
standardGeneric("show")
<bytecode: 0x7fe3ab627800>
<environment: 0x7fe3ab91a608>
Methods may be defined for arguments: object
Use  showMethods("show")  for currently available ones.
(This generic function excludes non-simple inheritance; see ?setIs)

and

> BiocGenerics::dbconn
standardGeneric for "dbconn" defined from package "BiocGenerics"

function (x) 
standardGeneric("dbconn")
<environment: 0x7fe3a9763648>
Methods may be defined for arguments: x
Use  showMethods("dbconn")  for currently available ones.

so, in one method the first parameter is called object and in the other x. It's annoying but there is no way around that.

from compounddb.

jorainer avatar jorainer commented on August 16, 2024

Or, you can change that, but then you'll get a WARNING each time you build, check or install the package.

from compounddb.

stanstrup avatar stanstrup commented on August 16, 2024

Ah I see.

from compounddb.

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