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abstrackr-web

web-based citation screening tool

article-downloader

Uses publisher APIs to programmatically retrieve scientific journal articles for text mining.

arxiv

Programmatic interface to the Arxiv API

asysd

automating-ebm-resources

A curated set of resources for automating evidence-based medicine

bibscan

R package to batch download PDFs from a Web of Science search

biosentvec

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

causal_inference_python_code

Python code for part 2 of the book Causal Inference, by Miguel Hernán and James Robins

chs-2021

covid_references

dedupendnote_open

Deduplication of EndNote RIS files

deduplicator

dssg19-cochrane-public

excel2latex

The Excel add-in for creating LaTeX tables

icasr.github.io

GitHub Pages

keywords2vec

knowledgebase

Source code used to develop the OHDSI knowledge base of sources with information relevant for assessing assocations between drugs and health outcomes of interest.

lapdftext

LA-PDFText is a system for extracting accurate text from PDF-based research articles (and an interface to be able to improve performance where needed). The system is open-source and provides a simple baseline function for extracting text from primary research articles using rules that developers can customize. This means that the system works quite well for most applications (and might occasionally make mistakes and extract the wrong text), but it is always possible to 'hack' your own rules and improve performance.

ldavis

R package for web-based interactive topic model visualization.

norma

Convert XML/SVG/PDF into normalised, sectioned, scholarly HTML

pmedconnect

robotreviewer3

Automatic synthesis of RCTs

robotsearch

Machine learning search filters

statcheck

t81_558_deep_learning

Washington University (in St. Louis) Course T81-558: Applications of Deep Neural Networks

tabula

Tabula is a tool for liberating data tables trapped inside PDF files

tar

Technologically Assisted Reviews in Empirical Medicine

tar_data_collection

test

what is github

trialstreamer

Living database of randomized controlled trials (RCTs)