Comments (5)
Hi,
What is your g++ and as version? Please read also #31 for details.
from kmc.
Hi,
Here is my g++ and as version:
gcc version 5.2.0 (GCC)
as --version: 2.20.51.0.2-5.46.el6
I guess maybe the as version is old.
I will try again, Thanks a lot ~
Best,
Wenjie
from kmc.
Hi,
Thanks.
Please let me know if you succeeded to solve this with newer version of as.
Best,
Marek
from kmc.
Hi,
When I tried to undate the new version binutils, some other problems occured...
So I turned to my classmate, and he help me with the conda (bioconda) source? ..sorry I just knew a little with this..finally I can use your great tools now.
Thanks a lot.
Best,
Wenjie
from kmc.
Hi,
I'm glad that in some way you were able to install KMC.
Just out of curosity I installed Scientific Linux with as 2.20, and installing new as version did help, so for sure the it was the reason.
I don't know if bioconda version of KMC is up to date, so if you want to compile KMC in the newest version you may report what other problems occurred, and I will try to help.
In that case please report here and reopen this issue, or create new one. For now I am closing this issue.
Anyway, thanks for using our software :)
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Related Issues (20)
- std::thread::hardware_concurrency() should not be used
- Error: cannot open file: /path/xx.fq.gz HOT 3
- the use of the -ci parameter HOT 3
- KMC reads the sequences from standard input HOT 2
- How to get kmer count of kmc output database HOT 8
- Apple Silicon Build Issue HOT 6
- have no peak HOT 11
- Error: unknown exception HOT 1
- Bug with extra large `k`-mers HOT 6
- trying to increase maximal value of a counter (using -cs) HOT 3
- KMC hangs HOT 1
- kmc stuck at Stage 1: XX%(less than 100%) HOT 1
- request: specify several input files (paired-end reads) HOT 3
- how to install kmc on arm platform οΌthe compiled KMC binary will not be used on ARM HOT 2
- how to install kmc HOT 3
- Space shortage for output not reported
- When compiling make on the arm platform, the following error occurs, using the clang and clang++ compilers HOT 21
- Error: some error while reading fasta file, please contact authors (kmc_core/fastq_reader.cpp: 704) HOT 1
- KMC yields an error on fixed width fasta files HOT 4
- Python 3.11 support
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