rbp-yara Goto Github PK

arboreto

A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.

beeline

BEELINE: evaluation of algorithms for gene regulatory network inference

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

deepsem

diane

Dashboard for the Inference and Analysis of Networks from Expression data

genept

nucleotide-transformer

🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics

pyscenic

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.