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Richard's Projects

amico icon amico

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

brainager icon brainager

Software for generating a brain-predicted age value, using Gaussian Processes regression, implemented in R

mrtrix3_connectome icon mrtrix3_connectome

Generate subject connectomes from raw image data and perform inter-subject connection density normalisation, using tools provided in the MRtrix3 software package.

plotly icon plotly

Create interactive web graphics from R via plotly's JavaScript graphing library

plotly-shiny icon plotly-shiny

Templates for embedding interactive plotly graphs in Shiny apps

plotting icon plotting

Various bits and pieces used for plotting

rotate_parcellation icon rotate_parcellation

Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.

scansforparticipants icon scansforparticipants

This repository contains code required to create fun "thank you" packs for participants in MRI studies. It takes the structural scans and makes pictures and movies of the brain. The appropriate programs are also included.

surfdist icon surfdist

For calculating exact geodesic distances on cortical surface meshes

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