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Name: Raquel de Mello e Pinho

Type: User

Company: University of California, Davis

Bio: Molecular biologist and data analyst working in a range of projects from genetic improvement to integration of multiple omics datasets.

Location: Portugal | USA | Brazil

Blog: https://raquelpinho.github.io/RaquelPinho/

Raquel Pinho

The is the repository of my website. Where you can find my profile, links to publications and packages, as well as information on my past and current projects. Please visit!

What you can find there:

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Raquel de Mello e Pinho's Projects

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

ff_no_milk_all_sections

Comparisons between FF group and Malnourished group with no milk supplementation independent of intestinal sections

moon_template

Moon is a minimal, one column jekyll theme.

r-kallisto

Analysis of Kallisto pseudo-alignments of RNA-seq reads using package slueth in R. In this case I will compare two groups in the jej section

reaper

Description on how I dwonloaded and intalled the Reaper/Tally/Minion softwares

In this repository I am analyzing the data from the three sections of small intestines using RUVseq package to account for the unwanted variance in the data, amd used both DESeq2 (MLE) and EdgeR (glmQLF) to calculate the DE genes in both softwares.

saturday_r

Angus R workshop 2018

seqreport

This is a R package to compile sequencing reports from FastQC and alignment tools such as bowtie and bwamem.

unix_gunzip

website_template

An R Markdown website template for a lab journal

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