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Vincent Ranwez's Projects

cligui icon cligui

Java library to parse command line options, generate GUI and documentation

genemodeltransfer icon genemodeltransfer

LRRtransfer is a complex gene family annotation transfer pipeline designed for plant LRR (Leucine-Rich Repeat) containing receptors. The pipeline use annotation of LRR gene families from a reference genome to annotate LRR of a closely related genome.

lrrprofiler icon lrrprofiler

LRRprofiler identified LRR-containing proteins from plant proteomes and annotate their domains and repeats

macse_v2_pipelines icon macse_v2_pipelines

This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

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