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randel avatar randel commented on July 19, 2024

Here is an example of input data in the package.
https://rdrr.io/cran/MixRF/man/sim.html

After installing and loading the package, one can try data(sim).
https://github.com/randel/MixRF/tree/master/data

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yezhengli-Mr9 avatar yezhengli-Mr9 commented on July 19, 2024

Get it. As a note:
it takes me about two hours to get estimation for 482 genes with 6 tissues by a 13-inch MacBook Pro.

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yezhengli-Mr9 avatar yezhengli-Mr9 commented on July 19, 2024

A note:
Three hours for 25 genes with 10 tissues by a (stronger?) server (IBM bash node).

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yezhengli-Mr9 avatar yezhengli-Mr9 commented on July 19, 2024

About Six hours and twenty minutes for 85 genes with 10 tissues by one IBM bash node.
However, seven and half hours for 52 genes with 10 tissues by one IBM bash node (while the latter case should be faster, IBM bash nodes might have different performance in the backend).

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yezhengli-Mr9 avatar yezhengli-Mr9 commented on July 19, 2024

About twelve hours for 25 genes with 20 tissues with one IBM bash node.

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