Comments (5)
r-barnes
commented on August 24, 2024
1
@theobarnhart-USGS Sorry about that. I'm a little busy this week, but will look into it as soon as I can.
In the meantime, I've reformatted your post so that the outputs are appropriately formatted. You can do this yourself by highlighting the outputs as pressing the <> button in the formatting bar, which will convert the outputs to "code" in a way which makes them much easier to read.
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r-barnes
commented on August 24, 2024
This probably has something to do with the file having the Int16 data type.
I should be able to fix this.
In the meantime, do you experience problems on Int32 or Float32/Double32 data?
from richdem.
johnniehard
commented on August 24, 2024
I'm getting the same errors, with the exception that it seems to be running some of the jobs?
mpirun -n 4 ./parallel_d8_accum.exe one @evict ~/kod/flodesapp/localdata/geodata/DEM_LM/riks_50m_nowater.tif ./out/%n.tif --bwidth 500 --bheight 500
c Program name = RichDEM v2.2.9
c Script compiled at = 2019-10-09 11:09:19 UTC
c Git hash = abc04d81216d7cf5
c Copyright = Richard Barnes © 2018
a Analysis command = ./parallel_d8_accum.exe one @evict /home/johnnie/kod/flodesapp/localdata/geodata/DEM_LM/riks_50m_nowater.tif ./out/%n.tif --bwidth 500 --bheight 500
A Barnes (2017) Parallel Non-divergent Flow Accumulation
C Barnes, R., 2017. Parallel non-divergent flow accumulation for trillion cell digital elevation models on desktops or clusters. Environmental Modelling & Software 92, 202-212. doi:10.1016/j.envsoft.2017.02.022
c Processes = 4
c Many or one = one
c Input file = /home/johnnie/kod/flodesapp/localdata/geodata/DEM_LM/riks_50m_nowater.tif
c Retention strategy = @evict
c Block width = 500
c Block height = 500
c Flip horizontal = 0
c Flip vertical = 0
c Cache compression = FALSE
m Total width = 16000
m Total height = 32000
m Block width = 500
m Block height = 500
m Total cells to be processed = 512000000
t Preparer time = 0.0128314 s
c Input data type = Float32
m Jobs created = 2048
p Jobs remaining = 2047
p Jobs remaining = 2046
p Jobs remaining = 2045
p Jobs remaining = 2044
p Jobs remaining = 2043
p Jobs remaining = 2042
p Jobs remaining = 2041
p Jobs remaining = 2040
p Jobs remaining = 2039
p Jobs remaining = 2038
p Jobs remaining = 2037
p Jobs remaining = 2036
p Jobs remaining = 2035
p Jobs remaining = 2034
p Jobs remaining = 2033
p Jobs remaining = 2032
p Jobs remaining = 2031
p Jobs remaining = 2030
p Jobs remaining = 2029
p Jobs remaining = 2028
p Jobs remaining = 2027
p Jobs remaining = 2026
p Jobs remaining = 2025
p Jobs remaining = 2024
p Jobs remaining = 2023
p Jobs remaining = 2022
p Jobs remaining = 2021
p Jobs remaining = 2020
p Jobs remaining = 2019
p Jobs remaining = 2018
p Jobs remaining = 2017
p Jobs remaining = 2016
p Jobs remaining = 2015
p Jobs remaining = 2014
p Jobs remaining = 2013
p Jobs remaining = 2012
p Jobs remaining = 2011
p Jobs remaining = 2010
p Jobs remaining = 2009
p Jobs remaining = 2008
p Jobs remaining = 2007
p Jobs remaining = 2006
p Jobs remaining = 2005
p Jobs remaining = 2004
p Jobs remaining = 2003
p Jobs remaining = 2002
p Jobs remaining = 2001
p Jobs remaining = 2000
p Jobs remaining = 1999
p Jobs remaining = 1998
parallel_d8_accum.exe: ../../include/richdem/common/Array2D.hpp:552: richdem::Array2D< <template-parameter-1-1> >::i_t richdem::Array2D< <template-parameter-1-1> >::getN(richdem::Array2D< <template-parameter-1-1> >::i_t, uint8_t) const [with T = unsigned char; richdem::Array2D< <template-parameter-1-1> >::i_t = unsigned int; uint8_t = unsigned char]: Assertion `0<=n && n<=8' failed.
[gib:28256] *** Process received signal ***
[gib:28256] Signal: Aborted (6)
[gib:28256] Signal code: (-6)
[gib:28256] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x12890)[0x7f2e4a729890]
[gib:28256] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xc7)[0x7f2e4a364e97]
[gib:28256] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x141)[0x7f2e4a366801]
[gib:28256] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x3039a)[0x7f2e4a35639a]
[gib:28256] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x30412)[0x7f2e4a356412]
[gib:28256] [ 5] ./parallel_d8_accum.exe(+0x2c96d)[0x55dac951296d]
[gib:28256] [ 6] ./parallel_d8_accum.exe(+0x30b62)[0x55dac9516b62]
[gib:28256] [ 7] ./parallel_d8_accum.exe(+0x35f40)[0x55dac951bf40]
[gib:28256] [ 8] ./parallel_d8_accum.exe(+0x406a1)[0x55dac95266a1]
[gib:28256] [ 9] ./parallel_d8_accum.exe(+0x10391)[0x55dac94f6391]
[gib:28256] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f2e4a347b97]
[gib:28256] [11] ./parallel_d8_accum.exe(+0x10d0a)[0x55dac94f6d0a]
[gib:28256] *** End of error message ***
p Jobs remaining = 1997
p Jobs remaining = 1996
p Jobs remaining = 1995
parallel_d8_accum.exe: ../../include/richdem/common/Array2D.hpp:552: richdem::Array2D< <template-parameter-1-1> >::i_t richdem::Array2D< <template-parameter-1-1> >::getN(richdem::Array2D< <template-parameter-1-1> >::i_t, uint8_t) const [with T = unsigned char; richdem::Array2D< <template-parameter-1-1> >::i_t = unsigned int; uint8_t = unsigned char]: Assertion `0<=n && n<=8' failed.
[gib:28257] *** Process received signal ***
[gib:28257] Signal: Aborted (6)
[gib:28257] Signal code: (-6)
[gib:28257] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x12890)[0x7f3e32a85890]
[gib:28257] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xc7)[0x7f3e326c0e97]
[gib:28257] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x141)[0x7f3e326c2801]
[gib:28257] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x3039a)[0x7f3e326b239a]
[gib:28257] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x30412)[0x7f3e326b2412]
[gib:28257] [ 5] ./parallel_d8_accum.exe(+0x2c96d)[0x55ab9b04a96d]
[gib:28257] [ 6] ./parallel_d8_accum.exe(+0x30b62)[0x55ab9b04eb62]
[gib:28257] [ 7] ./parallel_d8_accum.exe(+0x35f40)[0x55ab9b053f40]
[gib:28257] [ 8] ./parallel_d8_accum.exe(+0x406a1)[0x55ab9b05e6a1]
[gib:28257] [ 9] ./parallel_d8_accum.exe(+0x10391)[0x55ab9b02e391]
[gib:28257] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f3e326a3b97]
[gib:28257] [11] ./parallel_d8_accum.exe(+0x10d0a)[0x55ab9b02ed0a]
[gib:28257] *** End of error message ***
p Jobs remaining = 1994
p Jobs remaining = 1993
p Jobs remaining = 1992
p Jobs remaining = 1991
p Jobs remaining = 1990
p Jobs remaining = 1989
p Jobs remaining = 1988
parallel_d8_accum.exe: ../../include/richdem/common/Array2D.hpp:552: richdem::Array2D< <template-parameter-1-1> >::i_t richdem::Array2D< <template-parameter-1-1> >::getN(richdem::Array2D< <template-parameter-1-1> >::i_t, uint8_t) const [with T = unsigned char; richdem::Array2D< <template-parameter-1-1> >::i_t = unsigned int; uint8_t = unsigned char]: Assertion `0<=n && n<=8' failed.
p Jobs remaining = 1987
p Jobs remaining = 1986
p Jobs remaining = 1985
[gib:28255] *** Process received signal ***
[gib:28255] Signal: Aborted (6)
[gib:28255] Signal code: (-6)
[gib:28255] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x12890)[0x7fb16bf4e890]
[gib:28255] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xc7)[0x7fb16bb89e97]
[gib:28255] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x141)[0x7fb16bb8b801]
[gib:28255] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x3039a)[0x7fb16bb7b39a]
[gib:28255] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x30412)[0x7fb16bb7b412]
[gib:28255] [ 5] ./parallel_d8_accum.exe(+0x2c96d)[0x561d86f2b96d]
[gib:28255] [ 6] ./parallel_d8_accum.exe(+0x30b62)[0x561d86f2fb62]
[gib:28255] [ 7] ./parallel_d8_accum.exe(+0x35f40)[0x561d86f34f40]
[gib:28255] [ 8] ./parallel_d8_accum.exe(+0x406a1)[0x561d86f3f6a1]
[gib:28255] [ 9] ./parallel_d8_accum.exe(+0x10391)[0x561d86f0f391]
[gib:28255] [10] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fb16bb6cb97]
[gib:28255] [11] ./parallel_d8_accum.exe(+0x10d0a)[0x561d86f0fd0a]
[gib:28255] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 2 with PID 0 on node gib exited on signal 6 (Aborted).
I've tried digging around the code, but I've never worked with c++ so I'm a bit lost.
from richdem.
johnniehard
commented on August 24, 2024
@r-barnes here's the DEM if you have the time to have a look: https://drive.google.com/open?id=1-NarHegMQiH6WmhfjR_4NlvB6tuEEsIb
from richdem.
johnniehard
commented on August 24, 2024
@r-barnes just want to let you know that we're working on this and making progress. It mostly turned out to be mismatches between code and documentation. PR coming up.
from richdem.
Related Issues (20)
- the documentation website(https://richdem.com/doc/index.html) is not available
- Saving a vis generated using rdshow
- Maximum DEM size for slope calculation?
- Issue with breaching and resolving flats
- Option to silent function TerrainAttribute HOT 2
- cmake 3.22.1: MPI not found; will not compile parallel programs for large-scale datasets. HOT 1
- Updating richdem as python package from pypi
- richdem can't find GDAL embedded in python/fiona package HOT 1
- Suppress Parsable Output
- python 3.11 HOT 11
- Installation Failure HOT 2
- Minimum curvature
- problem compiling rd_depression_hierarchy.cpp HOT 2
- Compiling the parallel priority flood program
- H
- Link to documentation in the README is out of date
- Python segmentation fault on Windows/Linux HOT 3
- [WinError 10054] An existing connection was forcibly closed by the remote host HOT 1
- no georeferencing info in geotiff output by rd_fill_spill_merge
- Error creating python wrapper
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