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Hi, the pretraining stage aims to obtain embeddings for key users that will used for computing inductive representations for query users in the next stage. Therefore, it is normal that the pretrained embeddings for testing are not accurate. For more details about two-stage training and the inductive CF models, please look at our paper.
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I would suggest doing some exploratory experiments if you are going to remove the bias term. Given the information you provide, I cannot give you some specific advices. Anyway, the attention mechanisms are actually quite time-consuming, so one potential way is to optimize its efficiency when you do not care about the performance very much
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