Comments (16)
Thanks for giving Sparrow a try! It appears that you're using version 4.8.2 of GCC. However, this version is too old; you need a C++ compiler supporting the C++17 standard. I recommend GCC 7.3.0 or higher.
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Thanks for giving Sparrow a try! It appears that you're using version 4.8.2 of GCC. However, this version is too old; you need a C++ compiler supporting the C++17 standard. I recommend GCC 7.3.0 or higher.
Thanks for replying me so quickly!
I tried to use following version:gcc (conda-forge gcc 13.2.0-2) 13.2.0
. But it still didn't work. And may the errors are same
error1.log
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I still see that files in /usr/include/c++/4.8.2
are included. Could you please post the output of CMake so that we can make sure that a suitable compiler is used?
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I still see that files in
/usr/include/c++/4.8.2
are included. Could you please post the output of CMake so that we can make sure that a suitable compiler is used?
Yes, I see. It seems I didn't really change it.
I attached the Cmakefiles here.(I'm not sure which one you need)
Thanks again!
CMakeFiles.zip
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Thanks, but what I need is the output of the CMake command which you run on the console. This command looks something like the following cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../install ..
.
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Thanks, but what I need is the output of the CMake command which you run on the console. This command looks something like the following
cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=../install ..
.
Okk,Here!
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Thanks! However, is this a clean, fresh run, i.e., after you deleted the entire build folder? You should ensure that there are no leftovers from previous runs.
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Thanks! However, is this a clean, fresh run, i.e., after you deleted the entire build folder? You should ensure that there are no leftovers from previous runs.
I think so. I do make clean
before build again.
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Please remove the entire build folder manually, and then post the output of CMake again.
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Please remove the entire build folder manually, and then post the output of CMake again.
Thanks very much. I deleted the build folder and cmake again.Here is the cmake output and the make error log.
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Thanks a lot! It might be that the new compiler is too new. I tested Sparrow with GCC 7.3.0, GCC 8.3.0, GCC 9.2.0, GCC 10.1.0, clang 8.0.0, and the Intel compiler from oneAPI 2021.4. Maybe you have access to a compiler which is very close to one of these versions?
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Thanks a lot! It might be that the new compiler is too new. I tested Sparrow with GCC 7.3.0, GCC 8.3.0, GCC 9.2.0, GCC 10.1.0, clang 8.0.0, and the Intel compiler from oneAPI 2021.4. Maybe you have access to a compiler which is very close to one of these versions?
Hi again! I changed the version to 10.4.0. It works well at the beginning. But it still failed. And here is the log file. Thanks again!
output.log
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I'm not entirely sure why the linker can't find this. However, after googling around a bit, it seems that other people had the same problem when working in a conda environment (see, e.g., google/glog#843). So, the next thing I would try is to compile Sparrow without any conda environment activated.
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I'm not entirely sure why the linker can't find this. However, after googling around a bit, it seems that other people had the same problem when working in a conda environment (see, e.g., google/glog#843). So, the next thing I would try is to compile Sparrow without any conda environment activated.
Ok, but I have to work in conda environment(no root permission). I tried several times again. It still gave me the same error :(
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Maybe you could try yet another compiler?
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Maybe you could try yet another compiler?
It works when the machine is rebooted. I don't know exactly how it works. It just works.
And the version of GCC is 11.4.0. Thanks for your help!
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Related Issues (20)
- Clang complaints about potential C++ ABI mismatch HOT 2
- Python is not imported if tests are disabled HOT 2
- Zero exit code on failure HOT 3
- Tests fail with clang 12 HOT 1
- Running PM6-D3H4 or DFTB-D3(BJ) HOT 2
- Support PM7 HOT 1
- DFT-D4 dispersion correction
- Implicit solvation HOT 3
- installation in github actions HOT 2
- Verbosity setting when running in python HOT 2
- Problem with Python Bingins HOT 13
- How I can run geometry optimization? HOT 1
- The thermochemistry results does not appear in python HOT 2
- When F is involved, is it currently impossible to do TD-DFT calculations involving triplet energy operations? HOT 1
- Sparrow Build Failure due to unlinked yaml-cpp HOT 4
- Compile notes HOT 5
- Memory-demanding compilation HOT 2
- Compilation fails with GCC 11 HOT 2
- Build Python bindings against existing sparrow installation HOT 8
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