Comments (1)
Thanks for giving me something to think about :) I'll have a look. @marco-mariotti
from pyranges.
Related Issues (20)
- Additional how-to-pages HOT 1
- Stable non-conflicting interface: v.1.0.0 HOT 2
- Return overlap between PyRanges objects, keeping columns from both? HOT 6
- subtract does not respect strandedness default
- when using .coverage: AttributeError: module 'numpy' has no attribute 'long' HOT 1
- count_overlaps causes overflow errors when number of reads are large HOT 1
- ModuleNotFoundError: No module named 'pyfaidx' HOT 2
- count_overlaps documentation says it supports nb_cpu but it is not implemented HOT 5
- overlap default strandedness argument incorrectly documented
- pr.get_sequence may not be working? HOT 4
- pyranges.cluster() Exception: Starts/Ends not int64 or int32: int64 HOT 9
- Unexpected behaviour with strandedness of pyranges object HOT 8
- PyRanges read_bed produces wrong number of chromosomes when cast to categorical HOT 1
- ResourceWarning: files opened in readers.read_bed are never closed HOT 3
- SyntaxError: invalid syntax for L131 in names.py HOT 12
- `join` method exits unexpectedly HOT 4
- `np.bool` error in gr.head()
- Add importable constants for Chromosome, Start, End, etc. HOT 2
- Can only do stranded operations when both PyRanges contain strand info HOT 2
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