Comments (7)
Ok @vsoch I will try now.
from deid.
Sure thing! I'll merge, and that should build / push the new container (and I'll deploy the updated pypi in a few minutes). Thanks for the catch and please report any other issues that you find! I think deid is less commonly used with the Docker container (a lot of users aren't familiar with containers) so it will be good to have a more thorough testing.
from deid.
Could you please give me the command to reproduce the error?
from deid.
Ah I reproduced, let me see if I can test if this is what is happening (with respect to install order).
from deid.
Thanks for reporting the issue @howardpchen. Would you care to test the PR? I've build a container with your suggested change 👉 #82
from deid.
Yes! Works well now. Thanks @vsoch
from deid.
Closing issue, thanks again!
from deid.
Related Issues (20)
- get skull pixel data HOT 12
- Specify more than one coordinates in the filter HOT 37
- Error on get_files import HOT 4
- ImportError: cannot import name 'clean_pixel_data' from 'deid.dicom.pixels' HOT 9
- Minimum Required Versions - Python >=3.7; Numpy >= 1.20 HOT 10
- Update documentation with correct package name ("deid-data" -> "deid") HOT 2
- Add pre-commit for linting HOT 1
- Photometric Interpretation of the dataset is YBG_FULL_422 [...] You may need to change the Photometric Interpretation to the correct value HOT 14
- BLANK Action only applicable to US and SS VRs HOT 3
- Tags within sequences (nested fields) are not affected by header actions HOT 2
- REPLACE action fails on numeric VR HOT 1
- Documentation Issue - Recipe Headers HOT 2
- Circular import for config HOT 3
- Possible incorrect coordinate definition HOT 5
- Anonymise DICOM pixel data using OCR HOT 8
- How to specify Private tags in the recipes HOT 6
- Deidentification Exception in Filters
- DEID dropping UIDs HOT 11
- (7fe0, 0010) Pixel Data doesn't appear in the dictionary when using get_identifiers HOT 4
- Recipe loading failure should result as an exception HOT 2
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