Comments (10)
from bh20-seq-resource.
Ideally fetch the data itself.
from bh20-seq-resource.
Useful for #56
from bh20-seq-resource.
Does it include links for metadata files too?
from bh20-seq-resource.
Beautiful - already runs on http://covid19.genenetwork.org/. See http://collections.lugli.arvadosapi.com/c=00a6af865453564f6a59b3d2c81cc7c1+123/sequence.fasta
from bh20-seq-resource.
from bh20-seq-resource.
I am thinking backups and verification by the uploader. Can we store the metadata in the form of a file as it comes in and annotate that in a triple (I can do the latter)? We also need some annotation for the pipelines run, though that is a separate task.
from bh20-seq-resource.
from bh20-seq-resource.
Beautiful. http://collections.lugli.arvadosapi.com/c=030bcb8fda7f19743157359f5855f7a6+126/sequence.fasta has http://collections.lugli.arvadosapi.com/c=030bcb8fda7f19743157359f5855f7a6+126/metadata.yaml
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from bh20-seq-resource.
Related Issues (20)
- Better sample id management HOT 10
- Add metadata about the workflows themselves HOT 1
- Automated uploads
- Add REST API for list items HOT 1
- Pangenome ontology
- Create test framework and SPARQL examples HOT 3
- Add information on ONT with NVIDIA Jetson HOT 1
- Track updating data here HOT 1
- Automated updates for semantic enrichment
- medata.ttl stops at uploading 24887 public sequences HOT 1
- Normalize identifiers with versions
- Update GenBank sequences HOT 1
- Move to https
- GenBank sample links have more metadata
- Add news feed HOT 2
- Create GFA subgraph for pangenome browser HOT 3
- wrong predicate for lab_address HOT 2
- submitterShap error HOT 2
- Ontology for assemblies HOT 3
- Demp: list by time stamp HOT 1
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