Comments (2)
The way to achieve this with KHASH: macros. The program creates hash tables for individual data types, but uses only the one corresponding to the selected data type.
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Might require having multiple instances of the same function pseudotemplates
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Related Issues (9)
- Step 1: Efficient computation from KmerCamel tailored to simplitigs
- Step 2: intersections & deletions; interface mimicked from ProphAsm 1
- Feature request: Support for k-mer frequencies
- Feature request: Parallelism HOT 2
- Feature request: Rolling hashing HOT 1
- Feature request: Reduce memory requirements for each simplitig by printing the right extensions directly to output.
- 2x slower with k=18 HOT 3
- Support for k-mer sizes > 64
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