praneet1988 Goto Github PK

age-dependent-changes-in-the-progenitor-translatome-coordinated-in-part-by-tsc1-increase-perception-

analyze_cytof_using_seurat

Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level. There are multiple tools to analyze CyTOF data but here I am presenting a tutorial of how one can quickly use Seurat (R package for scRNA-Seq analysis) for analyzing CyTOF data and understand the cellular and phenotypic diversity

bioinformatics_page

computational-suite-for-bioinformaticians-and-biologists

Computational Suite For Bioinformaticians and Biologists (CSBB) provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. CSBB now also has capability to process public data. Providing User with End to End pipeline experience

csbb-shiny

Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis

echinobase_ngs_bioinformatics_pipeline

elefhant

Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classifiers 1) RF 2) SVM and 3) LR

elefhant-shiny

ELeFHAnt: A supervised machine learning approach for label harmonization and annotation of single cell RNA-seq data (Shiny App)

elefhantdev

explore-single-cell-resources-and-databases

I have created a RShiny app to help community explore popular single cell based databases and resources. Please help add to this Shiny app and help community explore datasets from one webpage.

inferring-and-visualizing-rna-velocity-in-bulk-rna-seq

Analysis steps to calculate RNA Velocity in Bulk RNA-Seq samples. Step by Step Guide.

scrnaseq-analysis-notes

scRNAseq analysis notes from Ming Tang

seurat

R toolkit for single cell genomics

single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage

Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversification during foregut organogenesis

singlecellanalysisscripts

Single cell transcriptomics analysis scripts

xenbase-ngs-bioinformatics-pipeline

Bioinformatics analysis pipeline to facilitate the processing of Gene Expression Omnibus Next Generation Sequencing datasets. Pipeline downloads, process and create visualization files. Supported genomes : xenopus-laevis, xenopus-tropicalis, human, mouse and zebrafish