pkhoueiry Goto Github PK

arthm

ARTHM Workshop I: Mining and Management of hematological databases.

attend-and-excite

Official Implementation for "Attend-and-Excite: Attention-Based Semantic Guidance for Text-to-Image Diffusion Models"

bicpca

Select the number of PCs using the Bayesian Information Criterion

biogpt

celldepot

cellxgene-gateway

Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

cellxgene_vip

Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.

covid_19

COVID 19 data from World In Data Including data from Lebanon

csvtk

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

dna-sequence-machine-learning

Understand DNA structure and how machine learning can be used to work with DNA sequence data.

dogmap

pipeline for dog WGS alignment

enrichedheatmap

make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.

esquisse

RStudio add-in to make plots interactively with ggplot2

fcscan

giskard

The testing framework dedicated to ML models, from tabular to LLMs 🛡️🧑‍🔬

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

scrna-seq

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

snakemake-slurm-template

tempomage

TEMPOral data Prediction of histone Modifications in Accessible GEnome

test

Getting familiar with github

thealgorithms

All Algorithms implemented in Python

trackplot

trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.

wes_germline_gatk

GATK workflow for WES on germline samples

wes_somatic_gatk

GATK based WES workflow for somatic samples