How to plot tissue regions returned by locate_tissue_cnts about tissueloc HOT 2 CLOSED

Ok. I have made some progress since last night. I suppose i can create a zero numpy array that corresponds to the image dimensions, then load your region coordinates to create a mask using that zero array as a template or starting point. Close?

I also noticed that the 16 regions in my test images were mostly tiny areas that i want to discard, so by increasing the "min_tissue_size", i was able to get the regions I want. The next challenge is to automate this tissue size tweaking process for when i run this on my whole dataset which has a bout 50 slides.

from tissueloc.

@fgfmds Sorry for the late reply. Thanks for your interest in this repo. You might consider using cv2.drawContours to overlay the located contour over the image. This code gist can be taken as an example.

from tissueloc.