Comments (2)
I am not sure I understand the problem here. As illustrated in STREAM tutorial notebooks, it should be quite straightforward to visualize whatever annotations you use.
from stream.
Hello,
Sorry for the late reply. Let me elaborate.
I am using scanpy for the analysis of my datasets. I have already annotated Louvain clusters with cell types in the scanpy. To study specific population from my datasets, I have subset them from main datasets and employed the stream for further analysis. But while making different plots in the stream, I can't select different parameters such as cell types, Louvain, etc. (details are in the attachment).
from stream.
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from stream.