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ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

app-library-backend

bioc_docker

Docker containers for Bioconductor

bioconda-recipes

Conda recipes for the bioconda channel.

cloud-deploy-kubenow

This repository contains scripts to manage the PhenoMeNal cloud CRE.

cloud-deploy-kubenow-cerebellin

Cloud deploy kubenow snapshot for Cerebellin

cloud-deploy-kubenow-cerebellin-20180523

cloud-deploy-kubenow-cerebellin with a new name

cloud-deploy-kubenow-cerebellin-20181206

cloud-deploy-kubenow-cerebellin-20190625

cloud-deploy-kubenow-dalcotidine

Cloud deploy kubenow fork for Dalcotidine release - A separate clone is needed instead of just a branch due to the inability of the TSI Portal backend to work against a different branch than master:(

cloud-deploy-kubenow-dalcotidine-20181206

cloud-deploy-kubenow-dalcotidine-20190625

container-artimid

Correction of mass isotopomer distribution (MID) for natural isotopes abundance, giving artificial MID

container-batch_correction

container-batman

container-biosigner

container-bruker2batman

convert zipped Bruker NMR raw data into tabulated txt file for BATMAN

container-camera

Collection of annotation related methods for mass spectrometry data

container-cdf2mid

R-program to read CDF files containing time course of mass spectra of 13C-labeled metabolites, and write the extracted spectra in a format appropriate for further analysis.

container-cfmid

container-csifingerid

container-dimspy

container-ecomet

Eco-Metabolomics container containing R and packages used in Ecology and Metabolomics

container-escher-fluxomics

Escher-based visualization for fluxes and concentrations generated from fluxomics data sets

container-fingerprintclustering

Performs unsupervised clustering among a metabolic network from a fingerprint

container-fingerprintsubnetwork

container-galaxy-k8s-runtime

PhenoMeNal runtime for Galaxy running inside a container orchestrator

container-ipo

PhenoMeNal repository for IPO

container-isa-extractor

container-isa2w4m