phancanhtrinh Goto Github PK

amitness.github.io

Personal blog where I visualize machine learning concepts using diagrams.

annotatingtranscriptomes

Assembly and annotation of transcriptomes de novo

ape

A Plasmid Editor

auriclass

Quick estimation of Candida auris clade using mash

bacterial_wgs_training

In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

bigwig_demo

biofung

bioinformatics-r

Bioinformatics with R cookbook

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

bioinformaticspracticals

Practical Introduction to Bioinformatics and Systems Biology with R (mainly)

blotter

bedford lab research

candida-albicans-microbiome-interaction

cg_oxidative_stress

Oxidative stress response of Candida glabrata.

cs-video-courses

List of Computer Science courses with video lectures.

csp2024

This depository use to distribute analysis work flow related to CSP manuscript.

despres_et_al_2021

Script for data analysis and figure generation of Despres et al 2021

dge_workshop

host_gene_microbiome_interactions

Analysis framework for integrating gut microbiome and host gene expression data

isham_wgs

ISHAM fungal whole genome sequencing benchmark project

lncrnas

script of lncRNA project

mycosnp

from CDC for fungal genomic analysis

phancanhtrinh.github.io

r-bioinformatics-cookbook

R Bioinformatics Cookbook, published by Packt

rmap

Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS

rtoolkit

This is my R functions.

salgadorc_candida_immune_response_2021

scrna.seq.course

Analysis of single cell RNA-seq data course, Cambridge University, UK

shortcv

tfcb_2022

Course website for MCB 536 Tools for Computational Biology

tutorial-gatk4-rnaseq-germline-snps-indels

Beginner's tutorial for GATK4 workflow on variant calling from RNA-seq.