Comments (3)
kbessonov1984
commented on September 18, 2024
1
fixed in v3.1.8 release
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kbessonov1984
commented on September 18, 2024
Hi,
I will need to look at this issue and it has to do with empty list of dataframes that need to be concatenated to generate a master table of plasmid features with respective coordinates. Effectively you are getting pandas error similar to pd.concat([]). This means that your sample has most likely no detected plasmid features or plasmids at all (had no time to test your inputs yet). This biomarker_dataframe was a new feature introduced only in version 3.1.7. Will address this edge case in the next release and push a patch meanwhile that would be available via source code installation. Since you already have all dependencies installed, then install from source code will be very painless.
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ejurga
commented on September 18, 2024
Sounds good! I'll use the earlier versions in the meantime.
I'll leave the issue open for now in case others run into the same problem.
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Related Issues (20)
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