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adaptive_kernel_methods

Python code for Kernel LMS (KLMS) algorithm with sklearn API. We also implemented neural spike kernels. We also have KLMS and Kernel PCA for neural spike data.

adversarial

Code and hyperparameters for the paper "Generative Adversarial Networks"

cbct-recon

deep CBCT reconstruction for artifact removal

cbctrecon

CBCT Reconstruction toolkit for Varian and Elekta (Mirror of GitLab)

checktomo

TomoTherapy secondary dose calculation tool

couchbase

This is a script to replace the couchbase in a series of CT.

couchinsert

dicom-interface

DICOM RT Interface for TOPAS

dicom_communication_101

Demonstrates basic communication Varian DICOM services daemon. (companion repo to chapter 4 in the book: Scripting RT for Physicists)

dicom_viewer

Simple DICOM RT Viewer for MATLAB

dopamine

Dopamine is a research framework for fast prototyping of reinforcement learning algorithms.

esapix

Extension library for the Varian Eclipse Scripting API

evil-dicom

A C# DICOM Library

fusion_tools

Rigid and deformable registration tools for MATLAB, including plastimatch plugin

gamma

1D, 2D, or 3D gamma computation in MATLAB

interactiveconebeamreconstruction

kerneladaptivefiltering

Kernel Adaptive Filtering: A Comprehensive Introduction

mixedimageseparation

with FastICA (and icasso for robustness)

niftynet

An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

nricp

Matlab implementation of non-rigid iterative closest point

pmb_2020_self_derived_oad_segmentor

Code for self-derived organ attention descriminator and segmentor for unpaired domain adaptation and unsupervised organ segmentation

protonplancheck

Proton Plan Check using API Scripting in Eclipse

psigan

Probabilistic segmentation and image matching segmentation network for unsupervised domain adaptation and segmentation

pyesapi

Python interface to Eclipse Scripting API

pylinac

A TG-142 toolkit for doing routine linear accelerator quality assurance

pytorch-unet

PyTorch implementation of the U-Net for image semantic segmentation with high quality images

rad-collision

Platform for collision detection during treatment planning in radiotherapy

ray_scripts

Python scripts for RayStation treatment planning system

repaintingutil

To generate repainting plan for PBS proton beam

rtk

Reconstruction Toolkit