peterzzq Goto Github PK
Name: Ziqi Zhang
Type: User
Company: Georgia Institute of Technology
Bio: CSE Ph.D. student at Georgia Tech
Twitter: Ziqi_Peter
Location: Atlanta
Blog: peterzzq.github.io
Name: Ziqi Zhang
Type: User
Company: Georgia Institute of Technology
Bio: CSE Ph.D. student at Georgia Tech
Twitter: Ziqi_Peter
Location: Atlanta
Blog: peterzzq.github.io
Test of CellPath
CeSpGRN: Inferring cell specific GRN using single-cell gene expression data
Parallel ILP heuristic for large PPI network reconstruction
Simulator setting for RNA velocity generation
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Preprocessing pipeline for scATAC-Seq and scRNA-Seq integration
test code for scDART
Generate single cell dataset during cell differentiation
Test genes for Spatial Variation
Extended-Symsim: generating simulated scRNA-Seq and scATAC-Seq data with continuous trajectory
This package simulates single cell RNA sequencing data during cell developmental process, the simulation includes unspliced RNA count, spliced RNA count, RNA velocity and cell developmental pseudo-time. The simulation can be used to benchmark computational methods including trajectory inference and RNA velocity inference.
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