penn-cnt Goto Github PK

arnold_lf-mri_ms

arnold_simulated_clinical_trial

bitle_segregation

Repository for analyses related to the manuscript: "Resting State Functional Connectivity Demonstrates Increased Segregation in Bilateral Temporal Lobe Epilepsy"

cnt_eeg_template

EEG focused fork of the Penn CNT code repository.

cnt_imaging_template

cnt_organization_readme

Information and examples for contributing to the penn-cnt organization :bookmark:

cnt_preprocessing_toolkit

Toolkit for pre-processing of intracranial EEG data, and an interactive pipeline for pre-processing method evaluation.

cnt_research_template

Research template repository for the University of Pennsylvania CNT lab

cnt_research_tools

CNT-approved research tools

cnt_tle_laterality

collaborator_repository

Repository for sharing code with collaborators

data-eco_bids-converter

Bids conversion scripts for data collaborations

deepresection

Code for neurosurgery resection zone segmentation on T1 MRI.

deepresection_statistical_analysis

epilepsy_lateralization

extracting-clinical-information-from-epilepsy-clinic-notes

Code for the publication titled "Extracting Seizure Frequency From Epilepsy Clinic Notes: A Machine Reading Approach To Natural Language Processing"

fmri_hup2bids

Python Heudiconv Wrapper for HUP fMRI to BIDS format conversion

generalization_of_nlp_in_clinical_contexts

ieeg-recon

IEEG electrode reconstruction: modular pipeline in MATLAB and Python

ieeg_atlas_sinha

IEEG atlas code originally developed by Nishant Sinha

lda-subfield-atrophy

multimodal_excitation_inhibition

Normative modeling and multimodal correspondence of excitation-inhibition (E:I) ratio

mxtrodes-2021

nlp_disparities_in_seizure_freedom

pattnaik-seizure-severity

Code for "A quantitative tool for seizure severity: diagnostic and therapeutic applications"

pennsieve-workflow_bid-validator

A simple workflow for Pennsieve to validate bids datasets.

r01_r61_pipeline

rns_processing_toolbox

This repository contains code for processing and analyzing data from the responsive neurostimulation (RNS) device by NeuroPace.

rns_stim-morphology

Analyzing how the functional and structural connectome predict response to repeated therapeutic stimulation.

scheid_ec_network_tools

Tools for effective connectivity network generation and analysis