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Li's Projects

areg icon areg

Processing of single-cell (Fluidigm C1 and 10x) and population (Truseq and brbseq) RNA-seq data related to Areg discovery and characterisation in mouse subcutaneous stromal vascular fraction cells

cellmet-2018-scrnaseq icon cellmet-2018-scrnaseq

Analysis of single-cell RNA-sequencing data described in the paper titled, "Deconstructing adipogenesis induced by beta3-adrenergic receptor activation with single cell expression profiling", published by Burl et al. in Cell Metabolism, 2018.

genome_evolution icon genome_evolution

Some primary work for Genome Evolution analysis(Phylogenetic tree;WGD;Ka/Ks;Gene_family;Syntenic;Blast2GO)

harmony icon harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

pagoda2 icon pagoda2

R package for analyzing and interactively exploring large single-cell RNA-seq datasets

pipernaseq icon pipernaseq

A comprehensive pipeline for RNAseq data analysis

rna_seq icon rna_seq

Snakemake pipeline for RNAseq Data analysis

trinity icon trinity

denovo RNAseq data analysis by trinity

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