pdiakumis Goto Github PK

bioconda-recipes

Conda recipes for the bioconda channel.

bioinfo-docker

Dockerising bioinformatic tools

cacao

Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer

chord

An R package for predicting HR deficiency from mutation contexts

conda-forge-pinning-feedstock

A conda-smithy repository for conda-forge-pinning.

conda-packaging

Building conda packages

covis

:umbrella: Coverage Visualisation for Cancer Genes. And more. Probably.

cromwell-configs

Configuration file templates to run WDL workflows with Cromwell

cromwell-deployment

Scripts and configuration to setup a Cromwell deployment

cuplr

Predicting tumor type using WGS derived features

dna-damage-estimation

:boom: Estimation of DNA damage

gh-actions-testing

Testing github actions

gpgr

:books: Genomics Platform Group Reporter

illumination

:high_brightness: Interacting with Illumina Connected Analytics (ICA) API

linkrvis

:bar_chart: Visualise results from genetic linkage analysis software

mmrdetect

moalmanac

Molecular Oncology Almanac, a clinical interpretation algorithm paired with a novel underlying knowledge base for precision cancer medicine

mutsigextractor

An R package for extracting mutational signatures from vcf files

ngs_utils

Utility functions for bioinformatics projects

pcgr

Personal Cancer Genome Reporter (PCGR)

pdiakumis.github.io

My website at https://pdiakumis.github.io

pebbles

:notes: Data and templates for rock (https://github.com/umccr/rock)

rock

:guitar: Rocking R at UMCCR

signature.tools.lib

R package containing useful functions for mutational signature analysis

sigrap

:notes: Wrappers for somatic mutation signature analysis tools

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

udemy-dl

Python script to download a udemy.com course, for personal offline use.

varpr

R package for Mendelian variant prioritisation based on in-house MPS pipeline

wdl-runner

Easily run WDL workflows on GCP

wdlz

WDL task library