Philipp Boersch-Supan's Projects
2019 Replication of Hastings & Powell (1991) Chaos in a Three-Species Food Chain
Slides for my #2021AOS_SCO talk on modelling avian moult phenology in R
Tutorial files to accompany Sorensen, Hohenstein, and Vasishth paper: http://www.ling.uni-potsdam.de/~vasishth/statistics/BayesLMMs.html
Tools to analyse EuroCES data
An example of how value could be calculated for a given Biodiversity Sampling Event (BSE)
cowsay w/ more animals, in R
Tutorial on organizing data in spreadsheets.
Code and data for Boersch-Supan & Johnson (2019): Two case studies detailing Bayesian parameter inference for dynamic energy budget models.
Bayesian inference for dynamical models of biological systems in R
DEBtool - package of DEB functions for Matlab
Utility functions for Dynamic Energy Budget models
Documentation for the Stan language and CmdStan
GPS constellation and dilution of precision calculations from almanac data
Some ecological functions, grouped mathematically and adapted from B. Bolker 2008, Ecological Models and Data in R
EWP regression models for underdispersed count data
Example models for Stan
Inference of demographic history from phylogeny
Tidy Data Frames of Marginal Effects for ggplot2
ggplot-based graphics and useful functions for GAMs fitted using the mgcv package
Hytool is a matlab toolbox for the interpretation of hydraulic tests in wells. The toolbox contains analytical solutions used to describe groundwater flow around wells, and functions for importing, displaying, and fitting a model to the data.
A 6 hour course on Stan with Dan Simpson, Vianey Leos-Barajas, and Andrew MacDonald
The Journal of Open Source Software
Jekyll Bootstrap theme
Misc. tests and benchmarks for debinfer
Fork of the CRAN R package repository for "moult — Models for Analysing Moult in Birds " with some patches
Code for simulation studies and analyses for the manuscript "Extended molt phenology models improve inferences about molt duration and timing"
Circular regression models for moult data
Bayesian inference for models of moult.
bits and bobs that are not (yet) in the narrower scope of moultmcmc