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Preston Basting's Projects

cactus icon cactus

Official home of genome aligner based upon notion of Cactus graphs

gene-transposition-patterns icon gene-transposition-patterns

Mrazek lab: Uses synteny between closely related species to determine rate of transposition of genes within given functional categories

isescan icon isescan

A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome

nodestat icon nodestat

Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.

ratt-with-gff icon ratt-with-gff

RATT-with-GFF enables Rapid Annotation Transfer Tool (RATT) to be used with a GFF as your annotation file. RATT is a great tool for transferring annotations from one genome to another, but requires the annotations be in EMBL format. This pipeline is designed to use existing file conversion tools in order to run RATT with GFF annotations files

samplot icon samplot

Plot structural variant signals from many BAMs and CRAMs

seqsat icon seqsat

produces a saturation curve for RNAseq datasets

smalr icon smalr

SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.

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