paulzierep Goto Github PK

beer_microbiome

Repo for my master thesis on beer microbiome

big-scape

Similarity networks of biosynthetic gene clusters

big-scape_galaxy

bioconda-recipes

Conda recipes for the bioconda channel.

cluster2vec

cmsearch_tblout_deoverlap

Script that removes lower scoring overlaps from cmsearch v1.1x --tblout files.

datatable-rendering

deepmicro

Deep representation learning for disease prediction based on microbiome data

docker-phyloseq

Dockerized deployment of the shiny-phyloseq app

earlham-galaxytools

Galaxy tools and workflows developed at the Earlham Institute

ena-cog-uk-wfs

Collection of scripts for automated SARS-CoV-2 genome surveillance.

flp

find long path (flp) algorithm

foodborne-project-data-analysis

galaxy

Data intensive science for everyone.

galaxy-hub

Galaxy Community Hub

galaxy-tool-metadata-extractor-test-wrapper

This repository contains a set of wrappers that can be used to test the Galaxy Tool Metadata Extractor workflow

galaxy_tool_extractor

galaxy_tools

Contains a set of Galaxy Tools mostly written by the Bioinformatics core at NML

galaxytools

:microscope::books: Galaxy Tool wrappers

gcdraw

Gene Cluster drawing and manipulation tool

infrastructure-playbook

Ansible playbook for managing UseGalaxy.eu infrastructure.

kraken2-db-builder

scripts to download NCBI genomes and create costum kraken2 db

mapseq

highthroughput rRNA sequence classification and OTU mapping for metagenomic samples

mgnify-api

mgnify_bprojekt

For my Bachelor's project, I am undertaking the task of porting, enhancing, and benchmarking a read-based MGnify analysis pipeline designed for microbiome data analysis, utilizing the Galaxy framework.

microgalaxy-survey

motus

a tool for marker gene-based OTU (mOTU) profiling

multi-package-containers

Testing building mulled containers for multi-requirement tools.

multi_modality_prediction

np_epitope_predictor

Pre-Fitted Non-Peptidic Epitope Predictor