Paul Brodersen's Projects
brainglobe.info website
a python based software for visualization of neuroanatomical and morphological data.
Core functionality of the CGAT code
A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
Entropy based binning of discrete variables.
Estimators for the entropy and other information theoretic quantities of continuous distributions
graph and drawing algorithms framework
Human-like Orthogonal Layout Algorithm
Interpolation in D-dimensional spaces using inverse distance weighted, k-nearest neighbours
Python implementation of a multitaper window method for estimating Wigner spectra for certain locally stationary processes
Area-weighted venn-diagrams for Python/matplotlib
Draw Euler diagrams and Venn diagrams with Matplotlib.
Venn diagrams with word clouds
The NEST simulator
Publication-quality network visualisations in python
Visualisation to compare different states of a network
Network Analysis in Python
A python module that automatically isolates neurites and potential synapses on immunofluorescence images.
https://nutil.readthedocs.io/en/latest/
Fast, flexible and easy to use probabilistic modelling in Python.
Collecting and visualizing information about postsynaptic current curves.
Restricted Boltzmann machine variants
Rectangle packing program
Automated vigilance state scoring based on LFP or EEG data
Registration of 2D sections to a 3D volume
Automated polysomnography for experimental animal research
A place to submit conda recipes before they become fully fledged conda-forge feedstocks