parkinsonlab Goto Github PK
Type: Organization
Type: Organization
The tutorials under this repository will take you through workflows for processing and analyzing 16S rRNA data.
Pipeline for automatic metabolic model reconstruction using an ensemble method for enzyme annotation
stash for bacarena docker build/install for version-lock/distribution among lab.
Files pertaining to our paper on the genome-scale metabolic network reconstruction for Brugia malayi.
Repository for Cell4D
Docker container for DeSeq2
Version 2 of the Density Estimation Tool for Enzyme ClassificaTion: scripts for enzyme annotation and pipeline for making the DETECT database
HMM Models Generated from EPS Operon Prediction Project.
Collection of codes used in the analysis of 16S and 18S rRNA sequencing surveys, which were conducted on stool DNA from healthy and malnourished children from Pakistan.
A hierarchical ensemble framework for taxonomic classification of short reads
scripts and tables used to generate figures in chicken cecal microbiome metanalysis paper
Visualizations of metabolic networks created by the Parkinson lab members
Scripts for book chapter "Analyzing Metabolic pathways in microbiomes"
Microbiome tutorial, running on MetaPro
Metatranscriptomics Tutorial
An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
Parkinson Lab's MG pipeline prototype
Running RGI tool on MetaPro outputs on SciNet
Repository for ToxoNet tool
A project interrogating the activities of murine gut protozoan Tritrichomonas, and its impact on the bacterial communities in healthy and IgA-deficient hosts. This study includes a protozoan draft genome assembly, single cell RNA-Seq data, and 16S bacterial and metatranscriptomics sequencing over the first month of colonization.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.