Single-end reads about transpi HOT 3 OPEN

Hello @kathrinannaotte,

Unfortunately, TransPi is only for paired-end reads. However, I can create new processes to do the assemblies with single reads and perform some of the steps, similar to the paired-end reads. I'll work something and let you know. How many files do you have?

Best,
Ramón

from transpi.

Hi @rivera10,

if you could create a SE version of TransPi, that would be awesome, thank you!

In total, I have 35 files which have around 600M reads altogether. If this takes too long to assemble I might downsample them or create assemblies of subsets from the data, have not decided on this yet.

All the best
Kathrin

from transpi.

Hi,
Any updates on TansPi for SE ?

from transpi.