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padpadpadpad avatar padpadpadpad commented on July 19, 2024

Dataset needs to be OTU count table where row names are the sample name, column names are the OTU sequence, and the matrix input are the counts used for each ASV in each sample.

from edenmicrobes.

padpadpadpad avatar padpadpadpad commented on July 19, 2024

@JulianDonald Added the datasets to reassign taxonomy to. They are saved as eden_fungi_unique_sequence.rds/eden_euk_unique_sequence.rds/eden_bact_unique_sequence.rds in data/sequencing/processed. They will need to read into R and then saved out as a csv. I tried to save them as csv but the files were too big to upload onto GitHub!

from edenmicrobes.

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