Comments (2)
Lioscro
commented on June 14, 2024
Hi, @paristau
Thanks for reaching out.
We can look into adding that to either kb or kallisto.
In the meantime, you can manually specify the barcode and UMI positions instead of using one of the predefined technologies to the -x argument.
More information is in the bus section of the kallisto manual here: https://pachterlab.github.io/kallisto/manual
For your case, you can provide -x 0,7,14:0,0,7:1,0,0 instead of the usual -x celseq2.
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paristau
commented on June 14, 2024
Thanks @Lioscro.
Manually specifying the barcode and UMI configuration worked.
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