Comments (2)
Hi @Minzhe, thanks for the interest in our work.
Indeed the script was written for pytoda==0.2.4
so the easy solution is just to downgrade the package inside your env (you would need to install from source though since pytoda only ships via PyPI since 1.0.0) but you are totally right that the whole repo is in an unstable state now since only some of the scripts were migrated to pytoda 1.0.2
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Hi @Minzhe, thanks for pointing out this issue! We did indeed forget to adapt the evaluation script to the new pytoda version. The newest commits should have fixed that!
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Related Issues (14)
- Data unavailable! HOT 1
- how did you get the tcr_full from VDJdb? HOT 2
- Need help with running semifrozen_finetuning.py HOT 7
- Question regarding pretraining HOT 1
- input output data size not match HOT 2
- Running/ training on own dataset HOT 4
- The logger give some advice, but I don't understand it. HOT 8
- Ligand with MHC HOT 1
- How do you visualize the epitope peptides based on the attention scores? HOT 1
- Bindingdb dataset HOT 1
- Running HOT 3
- shared dataset cannot be access HOT 3
- What to do when the TCR being targeted for prediction does not have the full length?
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