Name: John Osborne
Type: User
Company: University of Alabama at Birmingham
Bio: NLP, Phenotyping, Ontologies and Bioinformatics.
Location: Birmingham, Alabama
Blog: https://scholar.google.com/citations?user=IVOPCscAAAAJ&hl=en
John Osborne's Projects
A collection of utilities for manipulating data and calculating inter-annotator agreement in brat annotation files.
ClearTK tutorials
Clinical Reasoning Ontology
Deep Learning for Java, Scala & Clojure on Hadoop, Spark & GPUs
Please use these examples based on deeplearning4j 0.4.* release.
Code for AMIA 2020 Paper "Identification of Gout Flares in Chief Complaint Text Using Natural LanguageProcessing"
Java UIMA tools to handle analysis of BRAT annotations.
The PhysioNet Data Use Agreement and License
Schema at the University of Alabama at Birmingham for storing the results of Clinical NER
Fast, Scientific Computing for the JVM (NDArrays)
Oxford Deep NLP 2017 course - Practical 1: word2vec
Type system and some annotators related to semeval NER tasks
Standalone UiServer for DeepLearning4j
Short code to do some simple indexing of UMLS.
Word2Vec Java Port